Deatailed information for cohesin site CDBP00416214
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00416214
- Locus: chr21-29367279-29367632
- Data sourse: GSE25021, ENCSR153HNT, GSE206145-GSE177045
- Cell type: K-562, MCF-7
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 66%,
"15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: CBX1, CHD8, CBX3, POU5F1, ZFX, XBP1, ESR2, FOXA1, ERG3, MEF2C, ZFHX2, KDM1A, RELA, CREBBP, ZNF384, MYC, RUNX2, HIF1A, GATA3, TP63, NRIP1, ZNF143, RCOR1, ARNTL, NR3C1, NCOA3, TRIM28, ZMYM3, PIAS1, TP53, ESR1, MYOD1, CTCF, RBM22, SPI1, BCL11A, AR, GATA2, RBAK, ZBTB7A, RBM25, BCOR, NCOA2, AHR
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,
- Related loop: chr21:29075000-29100000~~chr21:29350000-29375000, chr21:29089019-29091765~~chr21:29371286-29373596, chr21:29089067-29091786~~chr21:29371469-29373463, chr21:29089072-29091405~~chr21:29371501-29373446, chr21:29089074-29091748~~chr21:29371374-29374062, chr21:29089111-29092269~~chr21:29371324-29373748, chr21:29089114-29093454~~chr21:29371506-29373246, chr21:29089167-29091099~~chr21:29371593-29373231, chr21:29089176-29092126~~chr21:29371501-29373493, chr21:29089188-29091090~~chr21:29371617-29373249, chr21:29089226-29091194~~chr21:29371464-29373421, chr21:29089235-29091115~~chr21:29371527-29373259, chr21:29089236-29091115~~chr21:29371371-29373442, chr21:29089247-29091085~~chr21:29371509-29373661, chr21:29089253-29091784~~chr21:29371510-29373232, chr21:29089253-29091866~~chr21:29371097-29373582, chr21:29089261-29091354~~chr21:29371626-29373446, chr21:29089268-29091194~~chr21:29371479-29373222, chr21:29089274-29091757~~chr21:29371508-29373478, chr21:29089285-29091336~~chr21:29371361-29373472, chr21:29089288-29091868~~chr21:29371371-29373773, chr21:29089289-29091023~~chr21:29371556-29373423, chr21:29089299-29091014~~chr21:29371547-29373219, chr21:29089315-29091812~~chr21:29371099-29373462, chr21:29089318-29091030~~chr21:29371154-29373646, chr21:29089325-29091118~~chr21:29371520-29373447, chr21:29089342-29090961~~chr21:29371508-29373470, chr21:29089350-29091002~~chr21:29371542-29373242, chr21:29089353-29091857~~chr21:29371396-29373685, chr21:29089357-29091053~~chr21:29371872-29373227, chr21:29089357-29091411~~chr21:29371472-29373597, chr21:29089362-29091799~~chr21:29371531-29373749, chr21:29089364-29091181~~chr21:29371607-29373564, chr21:29089367-29091075~~chr21:29371582-29373416, chr21:29089373-29091018~~chr21:29371649-29373205, chr21:29089382-29091075~~chr21:29371610-29373477, chr21:29089399-29090966~~chr21:29371712-29373257, chr21:29089465-29091193~~chr21:29371415-29373460, chr21:29089480-29091819~~chr21:29371612-29373705, chr21:29089486-29091829~~chr21:29370899-29373222, chr21:29089487-29090876~~chr21:29371623-29373660, chr21:29089487-29090877~~chr21:29371648-29373217, chr21:29089489-29091865~~chr21:29371051-29373223, chr21:29089501-29091781~~chr21:29371568-29373196, chr21:29089504-29091807~~chr21:29371508-29373687, chr21:29089514-29090878~~chr21:29371661-29373191, chr21:29089517-29091127~~chr21:29371534-29373393, chr21:29089531-29090868~~chr21:29371644-29373204, chr21:29089531-29091070~~chr21:29371617-29373218, chr21:29089571-29090843~~chr21:29371675-29373153, chr21:29091975-29093600~~chr21:29371099-29373462, chr21:29092025-29093652~~chr21:29371361-29373472, chr21:29092027-29093559~~chr21:29371542-29373242, chr21:29092120-29093357~~chr21:29370899-29373222, chr21:29100000-29125000~~chr21:29350000-29375000, chr21:29150000-29175000~~chr21:29350000-29375000, chr21:29162305-29165453~~chr21:29371510-29373232, chr21:29162307-29165517~~chr21:29371097-29373582, chr21:29162310-29165464~~chr21:29371472-29373597, chr21:29162316-29165407~~chr21:29371587-29373476, chr21:29162347-29165506~~chr21:29371508-29373478, chr21:29162377-29165492~~chr21:29371324-29373748, chr21:29162378-29165498~~chr21:29371396-29373685, chr21:29162871-29165217~~chr21:29371415-29373460, chr21:29162973-29165491~~chr21:29371374-29374062, chr21:29163076-29165466~~chr21:29371531-29373749, chr21:29163267-29165505~~chr21:29371371-29373442, chr21:29163284-29165488~~chr21:29371469-29373463, chr21:29163327-29165509~~chr21:29371286-29373596, chr21:29163334-29165506~~chr21:29371501-29373446, chr21:29163344-29165555~~chr21:29371154-29373646, chr21:29163366-29165439~~chr21:29371508-29373470, chr21:29163425-29165457~~chr21:29371556-29373423, chr21:29163441-29165302~~chr21:29371582-29373416, chr21:29163452-29165270~~chr21:29371509-29373661, chr21:29163690-29165671~~chr21:29370899-29373222, chr21:29163705-29165544~~chr21:29371661-29373191, chr21:29163714-29165477~~chr21:29371612-29373705, chr21:29163723-29165657~~chr21:29371051-29373223, chr21:29163746-29165675~~chr21:29371508-29373687, chr21:29163791-29165490~~chr21:29371644-29373204, chr21:29175000-29200000~~chr21:29350000-29375000, chr21:29225000-29250000~~chr21:29350000-29375000, chr21:29232432-29234372~~chr21:29371556-29373423, chr21:29232434-29234183~~chr21:29371542-29373242, chr21:29232441-29234476~~chr21:29371286-29373596, chr21:29232451-29234354~~chr21:29371361-29373472, chr21:29232529-29234351~~chr21:29371520-29373447, chr21:29267276-29269314~~chr21:29371542-29373242, chr21:29267340-29269377~~chr21:29371361-29373472, chr21:29350000-29375000~~chr21:29450000-29475000, chr21:29350000-29375000~~chr21:29475000-29500000, chr21:29350000-29375000~~chr21:29675000-29700000, chr21:29350000-29375000~~chr21:29800000-29825000, chr21:29350000-29375000~~chr21:29825000-29850000, chr21:29350000-29375000~~chr21:29850000-29875000, chr21:29350000-29375000~~chr21:30175000-30200000, chr21:29350000-29375000~~chr21:31075000-31100000, chr21:29360611-29362507~~chr21:29848684-29850668, chr21:29360755-29362361~~chr21:29849075-29850682, chr21:29360790-29362311~~chr21:29848956-29850672, chr21:29360960-29362381~~chr21:29848731-29851135, chr21:29360961-29362448~~chr21:29848870-29851001, chr21:29371324-29373748~~chr21:29848799-29851068,
Tools:
- Assay
