- Basic information
- CohesinDB ID: CDBP00416218
- Locus: chr21-29394941-29397193
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, ENCSR153HNT, GSE72082
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Cell type: K-562, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, PGR, FOXA2, SIN3A, ID3, DUX4, FOXA1, ZNF770, HOXB13, ERG, RELA, ZXDC, ZNF384, CREBBP, MYC, RAD21, PRDM1, NFIB, HIF1A, GRHL3, BACH1, ATF2, GATA3, SMC3, TAL1, SPIB, NRIP1, GATA1, ZNF143, MED1, SFPQ, NR3C1, ESRRA, NR2F2, TEAD1, TRIM28, TFAP2C, EZH2, ESR1, TP53, GRHL2, TRPS1, CTCF, TCF12, SPI1, BCL11A, EP300, AR, GATA6, HDAC2, GATA2, TRIM24, MED12, JUND, BRD4, MBD2, CTBP2, CLOCK, NR5A2, ZNF440, TEAD4, AHR
- Target gene symbol (double-evidenced CRMs): GRIK1,CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops