- Basic information
- CohesinDB ID: CDBP00416232
- Locus: chr21-29459661-29460114
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Data sourse: ENCSR000BTQ, ShirahigeLab-GSE177045, GSE72082, ENCSR703TNG, GSE25021, GSE50893
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Cell type: GM2610, GM2630, GM19238, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, PAX3-FOXO1, RELA, ZNF180, RAD21, PRDM1, XBP1, HIF1A, ESR1, SOX11, OTX2, GATA3, NFKB1, BATF, CTCF, ZNF449, HOXB13, BCL11A, STAG1
- Target gene symbol (double-evidenced CRMs): CCT8,GRIK1,BACH1,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops