- Basic information
- CohesinDB ID: CDBP00416234
- Locus: chr21-29465600-29465837
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Data sourse: ENCSR000EHX, GSE72082
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Cell type: MCF-7, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, CHD8, TOP2A, CHD2, NME2, DUX4, FOXA1, HOXB13, KDM1A, RELA, NFKB2, NEUROD1, NFIC, GATA4, ISL1, PRDM1, GRHL3, NFIB, ARNT, OTX2, GATA3, STAT3, PBX3, GATA1, RCOR1, HAND2, CEBPB, TEAD1, PIAS1, PITX3, EBF3, PHOX2B, CTCF, EP300, BCL11A, BHLHE40, AR, GATA2, SIX2, MXI1, TEAD4
- Target gene symbol (double-evidenced CRMs): BACH1,MAP3K7CL,GRIK1,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops