- Basic information
- CohesinDB ID: CDBP00416235
- Locus: chr21-29469142-29469499
-
Data sourse: GSE67783
-
Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 79%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NKX2-2, NFATC1, ZBTB48, FOXA1, CREBBP, JUNB, ATF3, MYC, NFIC, NEUROD1, OSR2, RUNX3, PBX4, ATF4, OTX2, ATF2, BATF, CDK8, CEBPB, SP7, SCRT2, PIAS1, NR2F1, KLF9, SPI1, JUND, PDX1
- Target gene symbol (double-evidenced CRMs): GRIK1,BACH1,MAP3K7CL,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops