Browse_each

Basic information

CohesinDB ID: CDBP00416236

Locus: chr21-29470559-29470708

Data sourse: ENCSR054FKH, GSE72082

Cell type: Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 78%, "5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: THAP11, POU2F2, MEF2B, ZNF316, CEBPA, HMG20A, FOXA2, TOP2A, SOX13, GTF2B, WT1, ZSCAN5A, MAFF, FOXA1, GATAD1, TCF7, SAP130, RXRB, SP5, MEF2C, HOXB13, HNF4G, KDM1A, YY1, MEF2A, RARA, NEUROD1, ATF3, MYC, ONECUT1, SMARCA4, HOMEZ, RUNX3, PRDM1, ATF4, OTX2, SMAD4, ZNF614, XRCC5, MIER3, NR2F6, CEBPG, CEBPB, TEAD3, TEAD1, TRIM28, KMT2A, KLF6, SCRT2, RCOR2, PHF5A, CTCF, KAT8, EP300, SP1, MIXL1, HNF4A, SPI1, SOX5, AR, MAFK, HDAC2, ZNF644, ASH2L, DRAP1, ZGPAT, EED, BRD4, FOXP1, CLOCK, NFIL3, FOXA3, GATAD2A, RBPJ, FOSL2

Target gene symbol (double-evidenced CRMs): MAP3K7CL,BACH1,CCT8,GRIK1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000156273, ENSG00000171189,

eachgene

Deatailed information for cohesin site CDBP00416236