Deatailed information for cohesin site CDBP00416241
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00416241
- Locus: chr21-29485004-29485661
- Data sourse: ENCSR153HNT, GSE86191, GSE73207
- Cell type: K-562, TF-1, HCT-116
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC3
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 79%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: CEBPB, ZNF90, TRIM28, TRIM24, NOTCH3, ZBTB33
- Target gene symbol (double-evidenced CRMs): BACH1,MAP3K7CL,GRIK1,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000156261, ENSG00000156265, ENSG00000156273, ENSG00000171189,
- Related loop: chr21:29075000-29100000~~chr21:29475000-29500000, chr21:29150000-29175000~~chr21:29475000-29500000, chr21:29350000-29375000~~chr21:29475000-29500000, chr21:29475000-29500000~~chr21:29625000-29650000, chr21:29475000-29500000~~chr21:29675000-29700000, chr21:29475000-29500000~~chr21:29800000-29825000, chr21:29475000-29500000~~chr21:29825000-29850000, chr21:29475000-29500000~~chr21:29850000-29875000, chr21:29475000-29500000~~chr21:30175000-30200000, chr21:29475000-29500000~~chr21:31075000-31100000,
Tools:
- Assay
