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Basic information

CohesinDB ID: CDBP00416243

Locus: chr21-29496266-29496695

Data sourse: ENCSR879KXD, GSE73207

Cell type: K-562, TF-1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SMC3,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 79%, "5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, POU5F1, MEIS1, ID3, ZNF534, ZFX, SIN3A, XBP1, DUX4, ZSCAN5A, STAT1, FOXA1, MEIS2, PBX2, TBP, ERG, RELA, MYBL2, MYC, SMARCA4, RFX1, ARID1B, GR, GRHL3, HIF1A, HMBOX1, TAL1, SMARCE1, ZNF143, CDK8, GATA1, LEF1, NR3C1, NCOA3, TRIM28, ZNF83, LMO2, ESR1, PKNOX1, TCF12, SPI1, BCL11A, AR, GATA2, ZNF644, ZNF880, SOX6, RNF2, BRD4, JUND, AFF1, ZNF24, EHMT2, EED

Target gene symbol (double-evidenced CRMs): MAP3K7CL,BACH1,GRIK1,CCT8

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000156273, ENSG00000171189,

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Deatailed information for cohesin site CDBP00416243