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Basic information

CohesinDB ID: CDBP00416248

Locus: chr21-29504406-29504779

Data sourse: GSE206145-NatGen2015, ENCSR153HNT

Cell type: K-562, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 74%, "5_TxWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, FOSL1, PPARG, ZSCAN5D, BRD1, POU5F1, ZFX, XBP1, ZBTB17, GTF2B, ZSCAN5A, FOXA1, ZBTB33, DDX5, PBX2, TBP, ZKSCAN1, YY1, RELA, CREBBP, ZNF384, JUNB, EHMT2, RUNX2, CDK6, MYC, ZNF362, RAD21, PRDM1, PBX4, HIF1A, GRHL3, HMBOX1, FOS, IKZF1, RCOR1, NFE2, GATA1, ARNTL, ZNF750, ZNF592, DIDO1, CREB1, ESR1, PKNOX1, JUN, ZHX2, CTCF, PAX8, GATA2, NOTCH3, BRD4, JUND, TEAD4, MLLT1, TFAP2C

Target gene symbol (double-evidenced CRMs): MAP3K7CL,GRIK1,CCT8

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,

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Deatailed information for cohesin site CDBP00416248