- Basic information
- CohesinDB ID: CDBP00416250
- Locus: chr21-29505770-29506068
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Data sourse: GSE50893, ENCSR000EHX, ENCSR000BKV
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Cell type: K-562, SK-N-SH, GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, PPARG, ZSCAN5D, BRD1, POU5F1, ZFX, XBP1, ZBTB17, GTF2B, ZSCAN5A, FOXA1, ZBTB33, DDX5, PBX2, TBP, ZKSCAN1, YY1, RELA, CREBBP, ZNF384, JUNB, EHMT2, RUNX2, CDK6, MYC, ZNF362, RAD21, PRDM1, PBX4, HIF1A, GRHL3, HMBOX1, FOS, IKZF1, RCOR1, NFE2, GATA1, ARNTL, ZNF750, ZNF592, DIDO1, CREB1, ESR1, PKNOX1, JUN, ZHX2, CTCF, PAX8, GATA2, NOTCH3, BRD4, JUND, TEAD4, MLLT1, TFAP2C
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
- Related loop:
chr21:29076937-29078408~~chr21:29504618-29505774,
chr21:29089074-29091748~~chr21:29498802-29501235,
chr21:29498758-29500987~~chr21:29848871-29851131,
chr21:29498761-29501306~~chr21:29848799-29851068,
chr21:29498762-29500871~~chr21:29848836-29851040,
chr21:29498791-29500809~~chr21:29848901-29851051,
chr21:29498877-29501050~~chr21:29848873-29851025,
chr21:29498889-29500781~~chr21:29848945-29850681,
chr21:29498908-29500997~~chr21:29848886-29851009,
chr21:29498988-29500813~~chr21:29848796-29851053,
chr21:29499107-29500791~~chr21:29848789-29851052,
chr21:29499126-29500820~~chr21:29848754-29850764,
chr21:29499131-29500921~~chr21:29848787-29851050,
chr21:29500000-29525000~~chr21:29650000-29675000,
chr21:29500000-29525000~~chr21:29675000-29700000,
chr21:29500000-29525000~~chr21:29800000-29825000,
chr21:29500000-29525000~~chr21:29825000-29850000,