- Basic information
- CohesinDB ID: CDBP00416281
- Locus: chr21-29661789-29662394
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Data sourse: ENCSR153HNT, ENCSR879KXD
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CBX1, CBX3, ID3, ZBTB17, ATF3, SMARCA4, ATF4, OTX2, ZEB2, MGA, TAL1, MAX, GABPA, IKZF1, CEBPG, ZNF592, CEBPB, TRIM28, MYB, L3MBTL2, TBX21, MNT, IRF1, E2F6, TRIM24, RNF2, DDX20, JUND, TEAD4, ZNF24
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 2
- Related genes and loops