Deatailed information for cohesin site CDBP00416283


Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBP00416283
  • Locus: chr21-29669366-29669693
  • Data sourse: ENCSR000EHX, ENCSR000BLY
  • Cell type: SK-N-SH
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.989
  • Subunit: Rad21
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
  • Compartment: 37% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "15_Quies": 86%, "14_ReprPCWk": 9%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: FOXA2, HDAC1, EBF1, CHD2, ID3, CEBPA, ZBTB17, DUX4, FOXA1, SRF, KDM1A, ZNF589, ATF3, MYC, GATA4, SMARCA4, RAD21, CHD7, TCF4, GRHL3, ATF4, OTX2, GATA3, PRDM9, HMBOX1, ATF2, MAX, ETV6, GATA1, IKZF1, RCOR1, ZNF320, HAND2, ZNF736, ARNTL, CEBPG, ZNF592, CEBPB, DIDO1, ZNF573, EZH2, PITX3, USF2, EBF3, TCF12, EP300, AR, PAX3-FOXO1, GATA6, DPF2, IRF1, GATA2, ZNF257, SOX6, ATF7, NOTCH3, JUND, TEAD4, ZNF175
  • Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL,GRIK1
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 7
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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