- Basic information
- CohesinDB ID: CDBP00416284
- Locus: chr21-29669973-29670688
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Data sourse: ENCSR879KXD
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, HDAC1, EBF1, CHD2, ID3, CEBPA, ZBTB17, DUX4, FOXA1, SRF, KDM1A, ZNF589, ATF3, MYC, GATA4, SMARCA4, RAD21, CHD7, TCF4, GRHL3, ATF4, OTX2, GATA3, PRDM9, HMBOX1, ATF2, MAX, ETV6, GATA1, IKZF1, RCOR1, ZNF320, HAND2, ZNF736, ARNTL, CEBPG, ZNF592, CEBPB, DIDO1, ZNF573, EZH2, PITX3, USF2, EBF3, TCF12, EP300, AR, PAX3-FOXO1, GATA6, DPF2, IRF1, GATA2, ZNF257, SOX6, ATF7, NOTCH3, JUND, TEAD4, ZNF175
- Target gene symbol (double-evidenced CRMs): GRIK1,CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 49
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
- Related loop:
chr21:28375000-28400000~~chr21:29675000-29700000,
chr21:28800000-28825000~~chr21:29675000-29700000,
chr21:29075000-29100000~~chr21:29650000-29675000,
chr21:29100000-29125000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29350000-29375000~~chr21:29675000-29700000,
chr21:29475000-29500000~~chr21:29675000-29700000,
chr21:29500000-29525000~~chr21:29650000-29675000,
chr21:29500000-29525000~~chr21:29675000-29700000,
chr21:29525000-29550000~~chr21:29675000-29700000,
chr21:29650000-29675000~~chr21:29825000-29850000,
chr21:29670992-29673008~~chr21:29848787-29851050,
chr21:29671075-29672540~~chr21:29777590-29779197,
chr21:29675000-29700000~~chr21:29775000-29800000,
chr21:29675000-29700000~~chr21:29800000-29825000,
chr21:29675000-29700000~~chr21:30025000-30050000,
chr21:29675000-29700000~~chr21:31250000-31275000,
chr21:29675000-29700000~~chr21:45600000-45625000,