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Basic information

CohesinDB ID: CDBP00416285

Locus: chr21-29671768-29672148

Data sourse: ENCSR000BLD, GSE93080, ENCSR000DZP, GSE143937, ENCSR230ZWH, ENCSR000BKV, ENCSR000FAD, GSE72082, ENCSR000EGW, ENCSR000BLY, ENCSR879KXD, ENCSR000BLS, GSE105028, GSE155324, ENCSR000ECE, GSE50893, ENCSR000BMY, GSE108869, ENCSR917QNE

Cell type: GM12892, H1-hESC, GM18505, Hep-G2, Lymphoblast, GM12878, GM12891, GM2588, HeLa-S3, SK-N-SH, K-562, Liver, GM19193, GM18486, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 6% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.833

Subunit: SMC3,Rad21,SA1,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 89%, "14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, RUNX1, ZBTB2, ZNF592, NEUROD1, SMC1A, ZBTB7A, CBX3, TRIM28, RAD21, BRD4, OTX2, SRF, SMC3, CTCF, BCL11A, YY1

Target gene symbol (double-evidenced CRMs): GRIK1,MAP3K7CL,CCT8

Function elements

Human SNPs: .

Number of somatic mutations (coding): 28

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,

eachgene

Deatailed information for cohesin site CDBP00416285