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Basic information

CohesinDB ID: CDBP00416286

Locus: chr21-29673085-29673417

Data sourse: ENCSR879KXD

Cell type: K-562

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 91%, "14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ATF7, MEIS2, FOXK2, FOXA1, PBX2, PRDM10

Target gene symbol (double-evidenced CRMs): GRIK1,MAP3K7CL,CCT8

Function elements

Human SNPs: .

Number of somatic mutations (coding): 147

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,

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Deatailed information for cohesin site CDBP00416286