Browse_each

Basic information

CohesinDB ID: CDBP00416311

Locus: chr21-29827930-29828093

Data sourse: GSE120943, GSE98367

Cell type: Monocytes, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 28% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 76%, "9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, CHD8, FOXA1, PBX2, JUNB, GATA3, STAT3, PAX5, GATA1, FOS, NR3C1, CEBPB, TRIM28, ZNF331, TP53, PKNOX1, NFKB1, SETDB1, PHOX2B, JUN, BCL11A, PAX8

Target gene symbol (double-evidenced CRMs): GRIK1,BACH1,MAP3K7CL,CCT8

Function elements

Human SNPs: .

Number of somatic mutations (coding): 7

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000156273, ENSG00000171189,

eachgene

Deatailed information for cohesin site CDBP00416311