- Basic information
- CohesinDB ID: CDBP00416312
- Locus: chr21-29828792-29830452
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Data sourse: GSE98367, GSE138405, ENCSR404BPV, GSE206145, GSE120943, ENCSR198ZYJ
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Cell type: RPE, Hela-Kyoto, Monocytes, Neurons-H1, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 84%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA2, FOXA2, PIAS1, FOXA1, CTCF, BAF155, ERG
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,BACH1,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 252
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000156273,
ENSG00000171189,
- Related loop:
chr21:29075000-29100000~~chr21:29825000-29850000,
chr21:29100000-29125000~~chr21:29825000-29850000,
chr21:29150000-29175000~~chr21:29825000-29850000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29350000-29375000~~chr21:29800000-29825000,
chr21:29350000-29375000~~chr21:29825000-29850000,
chr21:29375000-29400000~~chr21:29825000-29850000,
chr21:29450000-29475000~~chr21:29825000-29850000,
chr21:29475000-29500000~~chr21:29800000-29825000,
chr21:29475000-29500000~~chr21:29825000-29850000,
chr21:29500000-29525000~~chr21:29800000-29825000,
chr21:29500000-29525000~~chr21:29825000-29850000,
chr21:29525000-29550000~~chr21:29800000-29825000,
chr21:29575000-29600000~~chr21:29800000-29825000,
chr21:29600000-29625000~~chr21:29800000-29825000,
chr21:29650000-29675000~~chr21:29825000-29850000,
chr21:29675000-29700000~~chr21:29800000-29825000,
chr21:29700000-29725000~~chr21:29800000-29825000,
chr21:29800000-29825000~~chr21:31250000-31275000,