- Basic information
- CohesinDB ID: CDBP00416319
- Locus: chr21-29870913-29871168
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Data sourse: ENCSR000BLD, ENCSR153HNT
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Cell type: K-562, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"14_ReprPCWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, RBBP5, XBP1, DUX4, MAFF, FOXA1, HOXB13, ERG, RELA, MYC, EZH1, KDM4A, RAD21, ARNT, HIF1A, GABPA, TP63, ZNF143, CREB1, EZH2, ESR1, OCA2, C11orf30, SETDB1, CTCF, USF1, TAF1, SIX2, RNF2, NOTCH3, HNRNPLL, TEAD4, ZNF316
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL,BACH1,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 21
- Number of somatic mutations (non-coding): 0
- Related genes and loops