- Basic information
- CohesinDB ID: CDBP00416336
- Locus: chr21-30046773-30047436
-
Data sourse: GSE120943, ENCSR198ZYJ, ENCSR404BPV, GSE98367
-
Cell type: Neurons-H1, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 98%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PAX7, RAD21, NME2, PHOX2B, CTCF, HOXB13, EP300
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,GRIK1,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
- Related loop:
chr21:29075000-29100000~~chr21:30025000-30050000,
chr21:29475556-29477615~~chr21:30043860-30045602,
chr21:29675000-29700000~~chr21:30025000-30050000,
chr21:29900000-29925000~~chr21:30050000-30075000,
chr21:29925000-29950000~~chr21:30025000-30050000,
chr21:30025000-30050000~~chr21:30175000-30200000,
chr21:30025000-30050000~~chr21:30250000-30275000,
chr21:30025000-30050000~~chr21:30400000-30425000,
chr21:30025000-30050000~~chr21:30500000-30525000,
chr21:30025000-30050000~~chr21:31075000-31100000,
chr21:30025000-30050000~~chr21:31600000-31625000,
chr21:30043489-30045655~~chr21:30194059-30195711,
chr21:30043506-30045681~~chr21:30408230-30409738,
chr21:30043634-30045679~~chr21:30194094-30195702,
chr21:30043637-30045675~~chr21:30194049-30195562,
chr21:30043654-30045703~~chr21:30433235-30435097,
chr21:30043713-30045634~~chr21:30257148-30259258,
chr21:30043752-30045664~~chr21:30194049-30195711,
chr21:30043756-30045614~~chr21:30193229-30195738,
chr21:30043756-30045614~~chr21:30257090-30259197,
chr21:30043767-30045627~~chr21:30193927-30195724,
chr21:30043774-30045603~~chr21:30257103-30259279,
chr21:30043774-30045603~~chr21:30433524-30435077,
chr21:30043827-30045692~~chr21:30193829-30195709,
chr21:30043897-30045697~~chr21:30256685-30258690,
chr21:30043934-30045661~~chr21:30463362-30464553,
chr21:30043955-30045406~~chr21:30194162-30195586,
chr21:30043991-30045406~~chr21:30194144-30195644,
chr21:30044042-30045658~~chr21:30194075-30195765,
chr21:30050000-30075000~~chr21:30150000-30175000,
chr21:30050000-30075000~~chr21:30175000-30200000,
chr21:30050000-30075000~~chr21:30400000-30425000,
chr21:30050000-30075000~~chr21:31075000-31100000,
chr21:30050000-30075000~~chr21:31575000-31600000,
chr21:30050000-30075000~~chr21:31600000-31625000,