Deatailed information for cohesin site CDBP00416387
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- Basic information
- CohesinDB ID: CDBP00416387
- Locus: chr21-30458021-30458348
- Data sourse: GSE206145-NatGen2015, GSE86191
- Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 95%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZBTB48, ZNF362
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene: ENSG00000156261, ENSG00000156265,
- Related loop: chr21:29075000-29100000~~chr21:30450000-30475000, chr21:30325000-30350000~~chr21:30450000-30475000, chr21:30340273-30341985~~chr21:30463198-30464953, chr21:30344537-30345828~~chr21:30463198-30464953, chr21:30450000-30475000~~chr21:30750000-30775000, chr21:30450000-30475000~~chr21:30825000-30850000, chr21:30463139-30464752~~chr21:31085539-31087715,
Tools:
- Assay
