- Basic information
- CohesinDB ID: CDBP00416388
- Locus: chr21-30460297-30460641
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 97%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, ZFX, SP140
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
- Related loop:
chr21:29075000-29100000~~chr21:30450000-30475000,
chr21:30043934-30045661~~chr21:30463362-30464553,
chr21:30325000-30350000~~chr21:30450000-30475000,
chr21:30340273-30341985~~chr21:30463198-30464953,
chr21:30344537-30345828~~chr21:30463198-30464953,
chr21:30450000-30475000~~chr21:30750000-30775000,
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30463139-30464752~~chr21:31085539-31087715,