- Basic information
- CohesinDB ID: CDBP00416389
- Locus: chr21-30463194-30464181
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR000BUC, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE115250, GSE138405, GSE67783, GSE76893, GSE101921, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE145327, ENCSR000EEG, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000ECE, ENCSR807WAC, ENCSR000BMY, ENCSR000EHX, ENCSR748MVX, GSE97394, ENCSR217ELF, GSE55407, GSE105004, ENCSR944ZCT, GSE131956, GSE110061, GSE129526, ENCSR335RKQ, ENCSR000EDE, GSE68388, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, GM12890, HeLa-S3, GM2255, K-562, GM18486, DKO, H1-hESC, SNYDER, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, THP-1, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, Neurons-H1, A-549, GM19238, HeLa, CNCC-WT33iPSC, TC-71, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 25% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.489
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 96%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, MAFG, SMC1A, TBL1X, FOXA2, CHD8, SOX2, ZBTB48, MAFF, SMAD3, FOXA1, SRF, DDX5, HOXB13, ERG, ZBTB2, ZNF384, OGG1, MYC, RAD21, HIF1A, PROX1, MAFB, NKX3-1, ZNF143, FOS, MED1, TRIM28, CREB1, PIAS1, SMAD1, KDM5B, ESR1, C11orf30, ZNF334, SETDB1, CTCF, JUN, MAFK, AR, GATA2, EGLN2, BRD4, CTBP2, HCFC1R1, SMC1, SMC3, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
- Related loop:
chr21:29075000-29100000~~chr21:30450000-30475000,
chr21:30043934-30045661~~chr21:30463362-30464553,
chr21:30325000-30350000~~chr21:30450000-30475000,
chr21:30340273-30341985~~chr21:30463198-30464953,
chr21:30344537-30345828~~chr21:30463198-30464953,
chr21:30450000-30475000~~chr21:30750000-30775000,
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30463139-30464752~~chr21:31085539-31087715,