- Basic information
- CohesinDB ID: CDBP00416462
- Locus: chr21-31088221-31089142
-
Data sourse: ENCSR000BLD, GSE131606, GSE67783, ENCSR000BKV, GSE86191, GSE110061, GSE111913, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE206145, ENCSR000BMY, GSE130135, GSE106870, GSE145327, GSE131577
-
Cell type: RPE, H1-hESC, Fibroblast, HCT-116, HL-60, HEK293T, GM12878, RT-112, H9-hESC, K-562, CVI-hiPSC, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 76%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFYB
- Target gene symbol (double-evidenced CRMs): KRTAP19-1,MAP3K7CL,BACH1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops
- Related gene:
ENSG00000156265,
ENSG00000156273,
ENSG00000184351,
ENSG00000156299,
- Related loop:
chr21:28750000-28775000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:31075000-31100000,
chr21:29075000-29100000~~chr21:31075000-31100000,
chr21:29100000-29125000~~chr21:31075000-31100000,
chr21:29350000-29375000~~chr21:31075000-31100000,
chr21:29375000-29400000~~chr21:31075000-31100000,
chr21:29475000-29500000~~chr21:31075000-31100000,
chr21:30025000-30050000~~chr21:31075000-31100000,
chr21:30050000-30075000~~chr21:31075000-31100000,
chr21:30243714-30244885~~chr21:31085534-31087724,
chr21:30268150-30269592~~chr21:31085537-31087555,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30339916-30342014~~chr21:31085519-31087782,
chr21:30339931-30341880~~chr21:31085533-31087826,
chr21:30340011-30342123~~chr21:31085530-31087710,
chr21:30340055-30342502~~chr21:31085562-31087741,
chr21:30340192-30341934~~chr21:31085546-31087778,
chr21:30340204-30342131~~chr21:31085559-31087705,
chr21:30340273-30341985~~chr21:31085537-31087555,
chr21:30340305-30341906~~chr21:31085906-31087666,
chr21:30340318-30342001~~chr21:31085511-31087571,
chr21:30340324-30342049~~chr21:31085715-31087665,
chr21:30340334-30342037~~chr21:31085637-31087698,
chr21:30340351-30342574~~chr21:31085574-31087685,
chr21:30340360-30341986~~chr21:31085489-31087693,
chr21:30340372-30342163~~chr21:31085544-31087394,
chr21:30340384-30341923~~chr21:31085751-31087710,
chr21:30340477-30341815~~chr21:31085892-31087434,
chr21:30340480-30341926~~chr21:31085276-31087698,
chr21:30340481-30341892~~chr21:31085689-31087405,
chr21:30340611-30341818~~chr21:31085509-31087552,
chr21:30425000-30450000~~chr21:31075000-31100000,
chr21:30433599-30434839~~chr21:31085880-31087834,
chr21:30443713-30445080~~chr21:31085333-31087722,
chr21:30463139-30464752~~chr21:31085539-31087715,
chr21:30475000-30500000~~chr21:31075000-31100000,
chr21:30500000-30525000~~chr21:31075000-31100000,
chr21:30505110-30506740~~chr21:31085637-31087698,
chr21:30505207-30506386~~chr21:31085886-31087793,
chr21:30505225-30506380~~chr21:31085276-31087698,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30830459-30832429~~chr21:31085305-31087770,
chr21:30830463-30832644~~chr21:31085276-31087698,
chr21:30830556-30832338~~chr21:31085303-31087674,
chr21:30830558-30832217~~chr21:31085880-31087834,
chr21:30830586-30832133~~chr21:31085846-31087579,
chr21:30830591-30832139~~chr21:31085855-31087840,
chr21:30830596-30832211~~chr21:31085853-31087731,
chr21:30830621-30832317~~chr21:31085511-31087571,
chr21:30830627-30832163~~chr21:31085534-31087724,
chr21:30830642-30832041~~chr21:31085610-31087382,
chr21:30830642-30832312~~chr21:31085539-31087715,
chr21:30830656-30832111~~chr21:31085865-31087801,
chr21:30830656-30832237~~chr21:31085540-31087780,
chr21:30830659-30832102~~chr21:31085883-31087739,
chr21:30830671-30832343~~chr21:31085489-31087693,
chr21:30830675-30832099~~chr21:31085895-31087538,
chr21:30830675-30832195~~chr21:31085886-31087793,
chr21:30830678-30832179~~chr21:31085537-31087555,
chr21:30830681-30832084~~chr21:31085892-31087434,
chr21:30830698-30832369~~chr21:31085533-31087771,
chr21:30830704-30832054~~chr21:31085911-31087273,
chr21:30830706-30832273~~chr21:31085533-31087826,
chr21:30830708-30832383~~chr21:31085519-31087782,
chr21:30830758-30832312~~chr21:31085637-31087698,
chr21:30830762-30832234~~chr21:31085581-31087374,
chr21:30838509-30840405~~chr21:31085305-31087770,
chr21:30838591-30840304~~chr21:31085537-31087555,
chr21:30838850-30840221~~chr21:31085886-31087793,
chr21:30850000-30875000~~chr21:31075000-31100000,
chr21:30941769-30943065~~chr21:31085865-31087801,
chr21:30941770-30943050~~chr21:31085886-31087793,
chr21:30950000-30975000~~chr21:31075000-31100000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31325000-31350000,
chr21:31075000-31100000~~chr21:31375000-31400000,
chr21:31075000-31100000~~chr21:31450000-31475000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31600000-31625000,