- Basic information
- CohesinDB ID: CDBP00416463
- Locus: chr21-31096520-31101905
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, HUES9, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, T-47D, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, BGO3, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 79% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.144
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 49%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, ZNF384, ZFX, XBP1, DUX4, CDK9
- Target gene symbol (double-evidenced CRMs): MIS18A,KRTAP19-1,TIAM1,MAP3K7CL,BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 29
- Related genes and loops
- Related gene:
ENSG00000156265,
ENSG00000156273,
ENSG00000184351,
ENSG00000156299,
ENSG00000159055,
- Related loop:
chr21:28750000-28775000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:31075000-31100000,
chr21:29075000-29100000~~chr21:31075000-31100000,
chr21:29100000-29125000~~chr21:31075000-31100000,
chr21:29350000-29375000~~chr21:31075000-31100000,
chr21:29375000-29400000~~chr21:31075000-31100000,
chr21:29475000-29500000~~chr21:31075000-31100000,
chr21:30025000-30050000~~chr21:31075000-31100000,
chr21:30050000-30075000~~chr21:31075000-31100000,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30425000-30450000~~chr21:31075000-31100000,
chr21:30475000-30500000~~chr21:31075000-31100000,
chr21:30500000-30525000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30850000-30875000~~chr21:31075000-31100000,
chr21:30950000-30975000~~chr21:31075000-31100000,
chr21:31075000-31100000~~chr21:31175000-31200000,
chr21:31075000-31100000~~chr21:31325000-31350000,
chr21:31075000-31100000~~chr21:31375000-31400000,
chr21:31075000-31100000~~chr21:31450000-31475000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31600000-31625000,
chr21:31097524-31100200~~chr21:31142192-31143682,
chr21:31097524-31100200~~chr21:31179837-31181523,
chr21:31097524-31100200~~chr21:31580135-31582040,
chr21:31097524-31100200~~chr21:31603561-31606243,
chr21:31097635-31100206~~chr21:31179733-31181943,
chr21:31097635-31100206~~chr21:31579465-31582225,
chr21:31097635-31100206~~chr21:31603602-31605948,
chr21:31097651-31099664~~chr21:31180070-31181408,
chr21:31097659-31100122~~chr21:31142126-31143686,
chr21:31097659-31100122~~chr21:31179749-31181978,
chr21:31097659-31100122~~chr21:31603531-31606025,
chr21:31097662-31099856~~chr21:31603619-31605810,
chr21:31097665-31099883~~chr21:31179820-31181485,
chr21:31097665-31099883~~chr21:31603773-31605883,
chr21:31097675-31100213~~chr21:31179786-31181766,
chr21:31097685-31100223~~chr21:31179725-31181960,
chr21:31097685-31100223~~chr21:31603435-31606015,
chr21:31097693-31099837~~chr21:31603761-31605998,
chr21:31097698-31099915~~chr21:31179762-31181496,
chr21:31097698-31099915~~chr21:31603571-31605761,
chr21:31097703-31099820~~chr21:31603740-31605904,
chr21:31097825-31099965~~chr21:31179895-31181473,
chr21:31097825-31099965~~chr21:31604036-31605562,
chr21:31097828-31099837~~chr21:31179837-31181676,
chr21:31097828-31099837~~chr21:31603469-31605983,
chr21:31097834-31100105~~chr21:31142031-31143645,
chr21:31097834-31100105~~chr21:31179767-31181764,
chr21:31097834-31100105~~chr21:31579897-31582091,
chr21:31097834-31100105~~chr21:31603560-31606026,
chr21:31097840-31099913~~chr21:31179591-31181602,
chr21:31097840-31099933~~chr21:31142156-31143409,
chr21:31097840-31099933~~chr21:31179984-31181987,
chr21:31097840-31099933~~chr21:31580266-31581665,
chr21:31097840-31099933~~chr21:31604013-31605728,
chr21:31097840-31099938~~chr21:31179884-31181375,
chr21:31097840-31099938~~chr21:31603779-31605751,
chr21:31097847-31099741~~chr21:31179752-31181752,
chr21:31097847-31099741~~chr21:31603808-31605732,
chr21:31097850-31099840~~chr21:31579942-31582140,
chr21:31097852-31099834~~chr21:31179993-31181603,
chr21:31097852-31099834~~chr21:31580297-31581620,
chr21:31097852-31099834~~chr21:31603977-31605609,
chr21:31097852-31100234~~chr21:31603563-31605907,
chr21:31097853-31099955~~chr21:31179971-31181817,
chr21:31097866-31100218~~chr21:31179704-31181750,
chr21:31097866-31100218~~chr21:31579948-31582262,
chr21:31097866-31100218~~chr21:31603484-31605864,
chr21:31097869-31099852~~chr21:31603478-31605998,
chr21:31097870-31099669~~chr21:31603921-31605829,
chr21:31097873-31099839~~chr21:31603801-31605813,
chr21:31097877-31099898~~chr21:31179824-31181444,
chr21:31097877-31099898~~chr21:31579888-31581990,
chr21:31097877-31099898~~chr21:31603659-31605983,
chr21:31097883-31100039~~chr21:31179697-31181922,
chr21:31097883-31100039~~chr21:31603595-31606017,
chr21:31097887-31099829~~chr21:31179855-31181435,
chr21:31097887-31099865~~chr21:31179702-31181755,
chr21:31097887-31099865~~chr21:31603607-31605876,
chr21:31097887-31099866~~chr21:31603648-31605747,
chr21:31097887-31099870~~chr21:31179832-31181897,
chr21:31097887-31099870~~chr21:31580194-31582043,
chr21:31097892-31099900~~chr21:31179769-31181792,
chr21:31097892-31099900~~chr21:31580250-31582117,
chr21:31097893-31100303~~chr21:31179706-31181949,
chr21:31097893-31100303~~chr21:31579468-31582178,
chr21:31097893-31100303~~chr21:31603591-31605976,
chr21:31097894-31099945~~chr21:31603826-31605735,
chr21:31097896-31099782~~chr21:31142212-31143628,
chr21:31097896-31099782~~chr21:31179835-31181470,
chr21:31097896-31099782~~chr21:31603800-31605717,
chr21:31097903-31099685~~chr21:31603616-31605759,
chr21:31097906-31099678~~chr21:31180055-31181588,
chr21:31097906-31099678~~chr21:31579982-31581802,
chr21:31097906-31099678~~chr21:31603705-31605771,
chr21:31097906-31100239~~chr21:31179824-31181763,
chr21:31097906-31100239~~chr21:31580303-31582255,
chr21:31097906-31100239~~chr21:31603767-31606045,
chr21:31097923-31099913~~chr21:31179767-31181689,
chr21:31097923-31099913~~chr21:31603790-31605769,
chr21:31097936-31099894~~chr21:31603758-31605876,
chr21:31097941-31100177~~chr21:31179879-31181642,
chr21:31097941-31100177~~chr21:31580284-31581629,
chr21:31097941-31100177~~chr21:31603985-31605548,
chr21:31097943-31100132~~chr21:31179993-31181674,
chr21:31097943-31100132~~chr21:31580278-31581642,
chr21:31097943-31100132~~chr21:31604008-31605560,
chr21:31097962-31099613~~chr21:31180019-31181392,
chr21:31097962-31099613~~chr21:31580269-31582062,
chr21:31097968-31099503~~chr21:31179934-31181426,
chr21:31097976-31099983~~chr21:31179818-31181407,
chr21:31097982-31099419~~chr21:31179870-31181422,
chr21:31097986-31099396~~chr21:31180102-31181374,
chr21:31098003-31099384~~chr21:31604127-31605513,
chr21:31098023-31099887~~chr21:31180055-31181418,
chr21:31098023-31099887~~chr21:31604024-31605520,
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31100000-31125000~~chr21:31600000-31625000,
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31100000-31125000~~chr21:32800000-32825000,