- Basic information
- CohesinDB ID: CDBP00413922
- Locus: chr21-17376067-17376842
-
Data sourse: ENCSR000BLD, ENCSR167MTG, GSE67783, GSE72082, GSE86191, GSE111913, GSE105028, GSE206145-NatGen2015, ENCSR054FKH, GSE206145, GSE130135
-
Cell type: RPE, H1-hESC, Fibroblast, HCT-116, HEK293T, Hep-G2, RT-112, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CXADR,BTG3,C21orf91
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154640,
ENSG00000154642,
- Related loop:
chr21:16925000-16950000~~chr21:17350000-17375000,
chr21:16925000-16950000~~chr21:17375000-17400000,
chr21:17100000-17125000~~chr21:17350000-17375000,
chr21:17125000-17150000~~chr21:17350000-17375000,
chr21:17350000-17375000~~chr21:17775000-17800000,
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17350000-17375000~~chr21:18250000-18275000,
chr21:17351425-17352731~~chr21:17369915-17372377,
chr21:17375000-17400000~~chr21:17500000-17525000,
chr21:17375000-17400000~~chr21:17550000-17575000,
chr21:17375000-17400000~~chr21:17575000-17600000,
chr21:17375000-17400000~~chr21:17775000-17800000,
chr21:17375000-17400000~~chr21:17825000-17850000,