- Basic information
- CohesinDB ID: CDBP00413923
- Locus: chr21-17377529-17377890
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Data sourse: GSE206145-NatGen2015, GSE126755, GSE131577
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Cell type: Fibroblast, HL-60, Neutrophil
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): BTG3,C21orf91,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154640,
ENSG00000154642,
- Related loop:
chr21:16925000-16950000~~chr21:17350000-17375000,
chr21:16925000-16950000~~chr21:17375000-17400000,
chr21:17100000-17125000~~chr21:17350000-17375000,
chr21:17125000-17150000~~chr21:17350000-17375000,
chr21:17350000-17375000~~chr21:17775000-17800000,
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17350000-17375000~~chr21:18250000-18275000,
chr21:17375000-17400000~~chr21:17500000-17525000,
chr21:17375000-17400000~~chr21:17550000-17575000,
chr21:17375000-17400000~~chr21:17575000-17600000,
chr21:17375000-17400000~~chr21:17775000-17800000,
chr21:17375000-17400000~~chr21:17825000-17850000,