- Basic information
- CohesinDB ID: CDBP00414053
- Locus: chr21-17808054-17808570
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Data sourse: GSE116868, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, MB157
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"8_ZNF/Rpts": 65%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CBX5, CBX1, FOXA2, POU5F1, CHD2, ZFX, E2F8, DUX4, FOXA1, RBFOX2, LEO1, CDK9, HOXB13, TBP, MPHOSPH8, ZBTB7B, SMARCC1, TWIST1, ZNF585B, RELA, NOTCH1, ATF3, MYC, ISL1, ZFP36, SKIL, ARNT, HIF1A, GRHL3, GATA3, ATF4, GABPA, NKX3-1, SUPT5H, CDK8, RCOR1, GATA1, HAND2, CEBPB, STAT5B, BCLAF1, MYB, TRIM28, ZMYM3, CREB1, PIAS1, PITX3, SETDB1, EBF3, PHOX2B, CTCF, TCF12, EP300, SPI1, AR, SSRP1, GATA2, IRF4, TRIM24, FLI1, BRD4, RELB, TEAD4, TBX2, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): C21orf91,CXADR,BTG3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops