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Basic information

CohesinDB ID: CDBP00415219

Locus: chr21-25401827-25402550

Data sourse: GSE126634, GSE67783

Cell type: HAP1, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 84%, "9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, CEBPB, RUNX2, ZSCAN5D, MYB, CEBPA, ZFX, TCF4, TP53, BRD4, GATA3, MEF2C, TAL1, CDK9, MLLT1

Target gene symbol (double-evidenced CRMs): ATP5PF,GABPA,APP,JAM2,MRPL39

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154719, ENSG00000154721, ENSG00000154723, ENSG00000154727, ENSG00000142192,

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Deatailed information for cohesin site CDBP00415219