- Basic information
- CohesinDB ID: CDBP00415265
- Locus: chr21-25591791-25592728
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Data sourse: GSE103477
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Cell type: MDM
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 59%,
"5_TxWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, POU2F2, SMC1A, FOXA2, POU5F1, E2F7, TOP2A, SOX2, EBF1, PAF1, XBP1, NFATC1, DUX4, GTF2B, ZBTB48, FOXA1, RBFOX2, ERG, RELA, ZNF341, MYC, ZNF362, RAD21, PRDM1, ARNT, GRHL3, SOX11, TAL1, PAX5, TP63, MAF1, ZNF143, SUPT5H, KLF4, SP7, EZH2, OCA2, PHOX2B, CTCF, RBM22, BCL11A, AR, EGLN2, HOXA9, BRD4, SMARCA5, FOXP1, SMC1, ZZZ3, AHR
- Target gene symbol (double-evidenced CRMs): ATP5PF,APP,JAM2,GABPA,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154721,
ENSG00000154723,
ENSG00000154727,
ENSG00000142192,
- Related loop:
chr21:23975000-24000000~~chr21:25575000-25600000,
chr21:25325000-25350000~~chr21:25575000-25600000,
chr21:25400000-25425000~~chr21:25575000-25600000,
chr21:25575000-25600000~~chr21:25700000-25725000,
chr21:25575000-25600000~~chr21:25750000-25775000,
chr21:25575000-25600000~~chr21:26150000-26175000,
chr21:25575000-25600000~~chr21:26175000-26200000,
chr21:25575000-25600000~~chr21:26375000-26400000,
chr21:25575000-25600000~~chr21:26800000-26825000,
chr21:25575000-25600000~~chr21:28950000-28975000,