- Basic information
- CohesinDB ID: CDBP00415279
- Locus: chr21-25660159-25660645
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Data sourse: GSE126634, GSE152721
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Cell type: HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, ZNF660, ZNF317, ZBTB17, WT1, ZBTB48, ZSCAN16, SMARCC1, ZNF18, ZNF384, ZNF35, NEUROD1, ZSCAN30, CHD7, ZBTB44, ZIC2, OTX2, GABPA, STAT3, MZF1, KLF5, ZNF121, ETV1, PKNOX1, FEZF1, BCL6B, ZNF561, CTCF, ZNF664, ZNF324, FLI1, HOXA9, ZNF423, PHIP, PRDM6, MRTFB
- Target gene symbol (double-evidenced CRMs): ADAMTS5,CYYR1,JAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 0
- Related genes and loops