Deatailed information for cohesin site CDBP00415279


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  • Basic information
  • CohesinDB ID: CDBP00415279
  • Locus: chr21-25660159-25660645
  • Data sourse: GSE126634, GSE152721
  • Cell type: HAP1
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.989
  • Subunit: Rad21
  • CTCF binding site: non-CTCF CTCF motif: True
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 61% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "15_Quies": 84%, "5_TxWk": 7%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: GLIS1, ZNF660, ZNF317, ZBTB17, WT1, ZBTB48, ZSCAN16, SMARCC1, ZNF18, ZNF384, ZNF35, NEUROD1, ZSCAN30, CHD7, ZBTB44, ZIC2, OTX2, GABPA, STAT3, MZF1, KLF5, ZNF121, ETV1, PKNOX1, FEZF1, BCL6B, ZNF561, CTCF, ZNF664, ZNF324, FLI1, HOXA9, ZNF423, PHIP, PRDM6, MRTFB
  • Target gene symbol (double-evidenced CRMs): ADAMTS5,CYYR1,JAM2
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 18
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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