- Basic information
- CohesinDB ID: CDBP00415299
- Locus: chr21-25770235-25770898
-
Data sourse: GSE152721
-
Cell type: HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 47%,
"15_Quies": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: OTX2, FOXP1, NEUROD1
- Target gene symbol (double-evidenced CRMs): CYYR1,APP,GABPA,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25400000-25425000~~chr21:25775000-25800000,
chr21:25575000-25600000~~chr21:25750000-25775000,
chr21:25600000-25625000~~chr21:25750000-25775000,
chr21:25625000-25650000~~chr21:25775000-25800000,
chr21:25750000-25775000~~chr21:25850000-25875000,
chr21:25750000-25775000~~chr21:25950000-25975000,
chr21:25750000-25775000~~chr21:26150000-26175000,
chr21:25750000-25775000~~chr21:26400000-26425000,
chr21:25750000-25775000~~chr21:26450000-26475000,
chr21:25750000-25775000~~chr21:26525000-26550000,
chr21:25750000-25775000~~chr21:29050000-29075000,
chr21:25775000-25800000~~chr21:25950000-25975000,
chr21:25775000-25800000~~chr21:26150000-26175000,
chr21:25775000-25800000~~chr21:26375000-26400000,
chr21:25775000-25800000~~chr21:26525000-26550000,
chr21:25775000-25800000~~chr21:26675000-26700000,
chr21:25775000-25800000~~chr21:26700000-26725000,
chr21:25775000-25800000~~chr21:26800000-26825000,