- Basic information
- CohesinDB ID: CDBP00415322
- Locus: chr21-25862118-25863437
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE93080, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, ENCSR247LSH, GSE155324, ENCSR054FKH, GSE126755, GSE38411, ENCSR000BLD, GSE131577, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR760NPX, ENCSR000BLY, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, GSE116868, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, CUTLL1, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, GM19193, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, A-549, HUVEC, HCAEC, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 52% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.311
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SOX2, FOXA1, ATF3, ZNF189, CDX2, JMJD1C, ELF1, TRIM28, ETV1, ESR1, CTCF, JUN, PAX8, IRF4, SMC1, EHMT2, CHD8, POU5F1, CDK7, TOP2A, DUX4, SRF, MLLT3, ARID3A, HNF4G, HOXC5, ERG, MYC, ONECUT1, RAD21, RXRA, NKX2-1, GABPA, STAT3, XRCC5, NFE2, ARNTL, NR3C1, CEBPB, SPI1, ZNF644, SMARCA5, MRTFB, SMC1A, CBX1, CEBPA, SMAD3, ZNF654, TRIM22, ZBTB2, NOTCH1, GR, ARNT, ATF2, FOS, MED1, MYB, SMAD1, KLF16, SP1, BCL11A, HNF4A, REST, ATF7, BCOR, SMC3, STAG2, STAG1, ZNF394, CBX3, FOXA2, CREM, KDM1A, YY1, SKIL, HIF1A, BATF, TAL1, MAX, SPIB, GATA1, ZNF143, GFI1B, TCF7L2, KDM5B, ELF3, TBX21, AR, EGLN2, JUND, BRD4, ILF3
- Target gene symbol (double-evidenced CRMs): APP,CYYR1,MRPL39,GABPA
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25421231-25422782~~chr21:25861820-25863486,
chr21:25600000-25625000~~chr21:25850000-25875000,
chr21:25606776-25609578~~chr21:25861792-25863529,
chr21:25606789-25609441~~chr21:25861500-25863573,
chr21:25606803-25609752~~chr21:25861575-25863761,
chr21:25606815-25609560~~chr21:25861600-25863597,
chr21:25606816-25609496~~chr21:25861723-25863498,
chr21:25606871-25609531~~chr21:25861792-25863454,
chr21:25606873-25609559~~chr21:25861596-25863488,
chr21:25606887-25609611~~chr21:25861935-25863735,
chr21:25606899-25609820~~chr21:25861786-25863545,
chr21:25606943-25609746~~chr21:25861950-25863530,
chr21:25606945-25609755~~chr21:25861950-25863417,
chr21:25607003-25609546~~chr21:25862121-25863346,
chr21:25607005-25609570~~chr21:25861550-25863545,
chr21:25607533-25609506~~chr21:25862107-25863351,
chr21:25750000-25775000~~chr21:25850000-25875000,
chr21:25789469-25791355~~chr21:25861621-25863550,
chr21:25789550-25791386~~chr21:25861500-25863573,
chr21:25789570-25791547~~chr21:25861792-25863529,
chr21:25850000-25875000~~chr21:26175000-26200000,
chr21:25850000-25875000~~chr21:26325000-26350000,
chr21:25850000-25875000~~chr21:26450000-26475000,
chr21:25850000-25875000~~chr21:26675000-26700000,
chr21:25850000-25875000~~chr21:26700000-26725000,
chr21:25862108-25863550~~chr21:26715501-26718096,