- Basic information
- CohesinDB ID: CDBP00415328
- Locus: chr21-25877272-25877556
-
Data sourse: ShirahigeLab, GSE67783
-
Cell type: RPE, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 51%,
"5_TxWk": 48%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF394, ZNF426, ZNF697, ZNF433, ZNF101, HOXB13, MPHOSPH8, ZBTB8A, NEUROD1, ZNF266, ZFP64, PRDM12, ZNF781, OTX2, ZNF518A, ZNF189, ZNF629, ZNF558, ZXDB, ZBTB11, ZNF680, ZNF213, ZNF140, ZNF577, RBM22, ZNF664, REST, ZNF490, ZNF623, ZNF555, ZNF34
- Target gene symbol (double-evidenced CRMs): APP,ADAMTS1,CYYR1,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000142192,
ENSG00000166265,
ENSG00000154734,
- Related loop:
chr21:25600000-25625000~~chr21:25850000-25875000,
chr21:25600000-25625000~~chr21:25875000-25900000,
chr21:25606735-25609548~~chr21:25871125-25872823,
chr21:25606914-25609560~~chr21:25871146-25873235,
chr21:25750000-25775000~~chr21:25850000-25875000,
chr21:25850000-25875000~~chr21:26175000-26200000,
chr21:25850000-25875000~~chr21:26325000-26350000,
chr21:25850000-25875000~~chr21:26450000-26475000,
chr21:25850000-25875000~~chr21:26675000-26700000,
chr21:25850000-25875000~~chr21:26700000-26725000,
chr21:25871157-25873150~~chr21:26715252-26718261,
chr21:25875000-25900000~~chr21:25975000-26000000,
chr21:25875000-25900000~~chr21:26050000-26075000,
chr21:25875000-25900000~~chr21:26150000-26175000,
chr21:25875000-25900000~~chr21:26175000-26200000,
chr21:25875000-25900000~~chr21:26325000-26350000,
chr21:25875000-25900000~~chr21:26375000-26400000,
chr21:25875000-25900000~~chr21:26400000-26425000,
chr21:25875000-25900000~~chr21:26525000-26550000,
chr21:25875000-25900000~~chr21:26675000-26700000,
chr21:25875000-25900000~~chr21:26700000-26725000,
chr21:25875000-25900000~~chr21:26825000-26850000,
chr21:25875000-25900000~~chr21:28725000-28750000,
chr21:25880592-25882759~~chr21:26168595-26171726,
chr21:25880592-25882759~~chr21:26715468-26718051,
chr21:25880643-25882866~~chr21:26000836-26002126,
chr21:25880643-25882866~~chr21:26169947-26171806,
chr21:25880643-25882866~~chr21:26715421-26718120,
chr21:25880719-25882754~~chr21:26168603-26171485,
chr21:25880719-25882754~~chr21:26716644-26718024,
chr21:25880755-25882952~~chr21:26168541-26171786,
chr21:25880755-25882952~~chr21:26715348-26718310,
chr21:25880758-25882873~~chr21:26715355-26718381,
chr21:25880762-25882939~~chr21:26168567-26172542,
chr21:25880762-25882939~~chr21:26715356-26718205,
chr21:25880770-25883137~~chr21:26168491-26171741,
chr21:25880770-25883137~~chr21:26715200-26718356,
chr21:25880785-25882961~~chr21:26168597-26171877,
chr21:25880785-25882961~~chr21:26715447-26718081,
chr21:25880794-25882895~~chr21:26168600-26171765,
chr21:25880794-25882895~~chr21:26715448-26718086,
chr21:25880795-25883103~~chr21:26168579-26171699,
chr21:25880795-25883103~~chr21:26714832-26718268,
chr21:25880802-25883195~~chr21:26715193-26718542,
chr21:25880806-25883113~~chr21:26168567-26171752,
chr21:25880806-25883113~~chr21:26715204-26718284,
chr21:25880813-25882766~~chr21:26170075-26171770,
chr21:25880813-25882766~~chr21:26715409-26718024,
chr21:25880821-25883172~~chr21:26168566-26171735,
chr21:25880821-25883172~~chr21:26715280-26718256,
chr21:25880823-25883149~~chr21:26587219-26589182,
chr21:25880823-25883149~~chr21:26715242-26718467,
chr21:25880831-25882882~~chr21:26168509-26171714,
chr21:25880831-25882882~~chr21:26715317-26718206,
chr21:25880833-25882973~~chr21:25999508-26002814,
chr21:25880833-25882973~~chr21:26715347-26718278,
chr21:25880854-25882845~~chr21:26170145-26171780,
chr21:25880871-25883139~~chr21:26168536-26171703,
chr21:25880871-25883139~~chr21:26715160-26718522,
chr21:25880873-25883193~~chr21:26715252-26718261,
chr21:25880878-25883186~~chr21:26000596-26002821,
chr21:25880878-25883186~~chr21:26031390-26033174,
chr21:25880878-25883186~~chr21:26169836-26171640,
chr21:25880878-25883186~~chr21:26715477-26718366,
chr21:25880879-25883157~~chr21:25999375-26002832,
chr21:25880879-25883157~~chr21:26715196-26718405,
chr21:25880888-25882763~~chr21:26000649-26002298,
chr21:25880911-25882804~~chr21:26715538-26718232,
chr21:25880913-25882748~~chr21:26169335-26171730,
chr21:25880921-25883079~~chr21:26715396-26718303,
chr21:25880943-25882795~~chr21:26715485-26718222,
chr21:25880959-25882727~~chr21:26168566-26171728,
chr21:25881104-25882779~~chr21:26715351-26718059,
chr21:25881105-25882920~~chr21:26168579-26171721,
chr21:25881130-25882858~~chr21:26715239-26718238,