- Basic information
- CohesinDB ID: CDBP00415599
- Locus: chr21-26945787-26946495
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Data sourse: GSE105028, GSE116344, GSE206145-NatGen2015, GSE83726
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Cell type: Fibroblast, RH4, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 31%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PAX7, PGR, CHD8, NANOG, CEBPA, NKX2-2, MYCN, ZNF263, SOX2, ZFX, POU4F2, XBP1, POU5F1, ZBTB48, STAT1, FOXF1, ZNF205, MEF2C, CDK9, RING1B, SMARCC1, TWIST1, ERG, RELA, OGG1, NEUROD1, CDK6, SMARCA4, RAD21, CHD7, ARNT, HIF1A, GRHL3, RXRA, OTX2, ATF2, GABPA, ZNF143, CDK8, MITF, PRDM14, MED1, ARNTL, VDR, MYOG, CEBPB, KMT2A, ETV1, TFAP2C, PPARG, EZH2, ESR1, ZNF334, MYOD1, CTCF, BRD2, ARRB1, SPI1, TFAP2A, AR, PAX3-FOXO1, IRF4, ATF7, NOTCH3, BRD4, BCOR, RBPJ
- Target gene symbol (double-evidenced CRMs): JAM2,ADAMTS1,ADAMTS5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154721,
ENSG00000154734,
ENSG00000154736,
- Related loop:
chr21:17450000-17475000~~chr21:26925000-26950000,
chr21:25650000-25675000~~chr21:26925000-26950000,
chr21:26750000-26775000~~chr21:26950000-26975000,
chr21:26825000-26850000~~chr21:26925000-26950000,
chr21:26850000-26875000~~chr21:26950000-26975000,
chr21:26925000-26950000~~chr21:27100000-27125000,
chr21:26925000-26950000~~chr21:27200000-27225000,
chr21:26925000-26950000~~chr21:27300000-27325000,
chr21:26925000-26950000~~chr21:27375000-27400000,
chr21:26925000-26950000~~chr21:27550000-27575000,
chr21:26950000-26975000~~chr21:27200000-27225000,
chr21:26950000-26975000~~chr21:27350000-27375000,
chr21:26950000-26975000~~chr21:27450000-27475000,
chr21:26950000-26975000~~chr21:27550000-27575000,
chr21:26950000-26975000~~chr21:27675000-27700000,
chr21:26950000-26975000~~chr21:27700000-27725000,
chr21:26950000-26975000~~chr21:28325000-28350000,
chr21:26950000-26975000~~chr21:28725000-28750000,
chr21:26950000-26975000~~chr21:28750000-28775000,