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Basic information

CohesinDB ID: CDBP00415601

Locus: chr21-26948229-26948588

Data sourse: GSE116344

Cell type: RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 43%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, FOXA2, FOXF1, FOXA1, BAHD1, SMARCC1, NEUROD1, RXRA, OTX2, ATF2, PRDM9, NKX3-1, MED1, NR2F2, ETV1, NEUROG2, ESR1, SP1, HNF4A, BRD4, JUND, PDX1, FOSL2

Target gene symbol (double-evidenced CRMs): ADAMTS5,JAM2,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 1

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154721, ENSG00000154734, ENSG00000154736,

Tools:

Assay

refGene

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Cohesin site CDBP00415601

CDBP00415601 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00415601

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