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Basic information

CohesinDB ID: CDBP00415602

Locus: chr21-26949868-26950099

Data sourse: GSE116344

Cell type: RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 44%, "5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, FOXO1, POU5F1, DUX4, FOXF1, FOXA1, CDK9, HOXB13, TWIST1, SMARCC1, ERG, KDM1A, NOTCH1, SMARCA4, GRHL3, GATA3, GABPA, TAL1, SPIB, HAND2, TLE3, MYB, ETV1, PIAS1, PHOX2B, BAF155, LMO1, AR, GATA2, BRD4, FOXP1

Target gene symbol (double-evidenced CRMs): JAM2,ADAMTS5,ADAMTS1,LINC00113

Function elements

Human SNPs: .

Number of somatic mutations (coding): 1

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000154721, ENSG00000154734, ENSG00000154736, ENSG00000225298,

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Deatailed information for cohesin site CDBP00415602