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Basic information

CohesinDB ID: CDBP00416078

Locus: chr21-28951723-28951953

Data sourse: GSE132649, GSE67783

Cell type: T-47D, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "4_Tx": 78%, "5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF283, POU5F1, TOP2A, SOX2, ZFX, MTA2, GTF2B, ZNF317, FOXA1, MLL4, ERG, RELA, JUNB, MYC, RUNX2, GATA4, GRHL3, PBX4, DAXX, SKIL, OTX2, GATA3, ATF2, BATF, PRDM9, SPIB, ZNF143, GATA1, SUPT5H, FOS, KLF4, TERF1, ZNF121, BCLAF1, KLF6, TCF7L2, TP53, SPI1, TBX21, AR, GATA6, DPF2, IRF4, IKZF2, BRD4, JUND, ZZZ3, MLLT1

Target gene symbol (double-evidenced CRMs): LTN1,CCT8,USP16,MAP3K7CL

Function elements

Human SNPs: .

Number of somatic mutations (coding): 3

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000198862, ENSG00000156256, ENSG00000156261, ENSG00000156265,

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Deatailed information for cohesin site CDBP00416078