- Basic information
- CohesinDB ID: CDBP00416079
- Locus: chr21-28959314-28959751
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Data sourse: GSE138405, GSE206145-NatGen2015, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 50%,
"4_Tx": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, ZNF660, SOX2, MEIS2, FOXA1, RBFOX2, PBX2, MLL4, HNRNPK, ZNF90, ATF3, NFIC, CHD7, PRDM1, ZNF189, TEAD1, ZNF573, NFE2L2, ESR1, HNF1B, CTCF, TCF12, JUN, BAF155, EP300, SOX4, TEAD4, PDX1, NANOG, TOP2A, DUX4, TBP, HNF4G, ERG, MYC, ONECUT1, SMARCA4, GRHL3, PROX1, RXRA, GABPA, STAT3, NKX3-1, RCOR1, ZNF639, VDR, NR3C1, CEBPB, ESRRA, CREB1, EZH2, GRHL2, ZHX2, SPI1, HDAC2, GATA2, FLI1, MRTFB, RUNX1, MAFG, NKX2-2, SIN3A, SMAD3, PRDM10, CREBBP, ZNF384, RUNX2, GATA4, ZNF184, PBX4, SOX11, PBX3, MAFB, ZNF10, SUPT5H, FOS, MED1, CEBPD, SCRT2, PIAS1, NUP98-HOXA9, MAFK, RBM22, ARID1A, ASH2L, HOXA9, CTBP2, BCOR, FOXP1, PRDM6, FOXA2, GTF2B, WT1, FOXF1, ZBTB33, HOXB13, RELA, JUNB, BRG1, GATA3, TAL1, GATA1, AGO2, TLE3, SP7, TCF7L2, TP53, PHOX2B, T, BHLHE40, AR, ZBTB40, ZNF366, BRD4, SCRT1, JUND, ZZZ3, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): LTN1,MAP3K7CL,USP16,CCT8
- Function elements
- Human SNPs: Initial_pursuit_acceleration_in_psychotic_disorders
- Number of somatic mutations (coding): 105
- Number of somatic mutations (non-coding): 35
- Related genes and loops