- Basic information
- CohesinDB ID: CDBP00416184
- Locus: chr21-29304154-29305335
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Data sourse: GSE206145, GSE206145-NatGen2015, ENCSR230ZWH, ENCSR879KXD
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Cell type: K-562, Liver, Fibroblast, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,NIPBL,SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 45%,
"7_Enh": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, HMG20A, ZNF660, ZSCAN5C, SOX2, MEIS2, NME2, FOXA1, PBX2, HDGF, ATF3, NFIC, RUNX3, PRDM1, ZBTB44, CBFB, ZNF189, SMARCE1, ZSCAN4, MZF1, ZNF467, JMJD1C, ELF1, TRIM28, TEAD1, BCLAF1, ESR1, HDAC8, ZFP91, CTCF, MNT, ZNF260, PYGO2, DPF2, TRIM24, SOX6, E2F1, TEAD4, FOXA3, ZNF175, GATAD2A, EHMT2, RBPJ, EED, GLIS1, POU2F2, CHD8, POU5F1, TOP2A, ID3, CTBP1, MTA2, ZSCAN21, ZBTB17, STAT1, SRF, SAP130, NBN, ARID3A, ERG2, HIC1, ERG, MIER1, ZNF341, ONECUT1, MYC, SMARCA4, ARID1B, RAD21, DNMT1, GRHL3, NKX2-1, FOXK2, GABPA, ZNF614, IKZF1, MIER3, RCOR1, ZNF639, NFRKB, ARNTL, NR2F6, ESRRA, CEBPB, KMT2A, EZH2, FEZF1, ZHX2, SPI1, MIXL1, IRF1, HDAC2, GATA2, FLI1, NR2C2, RELB, NFIL3, CC2D1A, RUNX1, BCL6, HDAC1, CEBPA, NKX2-2, SOX13, ERG3, TRIM22, ZNF18, MEF2A, RARA, ZNF384, ZBTB2, CREBBP, BRD9, RUNX2, CDK6, GATA4, OSR2, ZNF184, BACH1, ATF2, PRDM9, ZEB2, HMBOX1, FOXM1, CBFA2T3, NR2C1, SMARCB1, SUPT5H, CDK8, ZNF10, MED1, TEAD3, TERF1, ZNF558, PML, SCRT2, PIAS1, SUPT16H, NCOA1, STAT5A, RBM22, NUP98-HOXA9, BCL11A, HNF4A, ZBTB7A, RBM25, ATF7, HOXA9, PHIP, BCOR, FOXP1, PRDM6, NCOR2, MLLT1, PTTG1, NFATC3, MEF2B, FOXA2, MTA3, EBF1, CREM, NFATC1, ZNF600, ZBTB33, MEF2C, HOXB13, ZNF318, KDM1A, YY1, RELA, TARDBP, JUNB, ZFP36, HIF1A, OTX2, GATA3, BATF, MAX, GATA1, ZNF143, TLE3, ZFP69B, CEBPG, ZNF592, NCOA3, NR2F2, SP7, NR2F1, PKNOX1, ELF3, ARID4B, AR, BHLHE40, TAF1, ZBTB40, ZNF324, ZNF366, EGR1, NCOR1, IKZF2, JUND, BRD4, SCRT1, ZNF24
- Target gene symbol (double-evidenced CRMs): USP16,CCT8,MAP3K7CL,BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000156256,
ENSG00000156261,
ENSG00000156265,
ENSG00000156273,
- Related loop:
chr21:29050000-29075000~~chr21:29300000-29325000,
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29089226-29091194~~chr21:29297826-29300567,
chr21:29089325-29091118~~chr21:29297646-29300784,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29162298-29165502~~chr21:29297765-29300738,
chr21:29162305-29165453~~chr21:29297767-29300990,
chr21:29162307-29165517~~chr21:29297019-29300536,
chr21:29162310-29165464~~chr21:29297711-29300996,
chr21:29162377-29165492~~chr21:29297770-29301094,
chr21:29162378-29165498~~chr21:29297718-29300698,
chr21:29162871-29165217~~chr21:29297676-29300550,
chr21:29163305-29165274~~chr21:29297780-29300635,
chr21:29163333-29165304~~chr21:29297741-29300792,
chr21:29163629-29165264~~chr21:29297785-29301017,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29300000-29325000,
chr21:29181177-29183351~~chr21:29297767-29300990,
chr21:29195502-29197292~~chr21:29297767-29300990,
chr21:29230443-29234332~~chr21:29297765-29300738,
chr21:29232806-29234518~~chr21:29297832-29300927,
chr21:29235070-29236701~~chr21:29297903-29299607,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,
chr21:29300000-29325000~~chr21:33200000-33225000,