- Basic information
- CohesinDB ID: CDBP00416187
- Locus: chr21-29315462-29315610
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Data sourse: GSE206145
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Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 50%,
"7_Enh": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, SOX2, FOXA1, HLF, PBX2, LEO1, HDGF, ATF3, NFIC, PRDM1, ATF4, ZNF189, SMARCE1, HDAC3, THRAP3, TRIM28, BCLAF1, SNAI2, NFE2L2, ESR1, MLL, HDAC8, JUN, TCF12, CTCF, BAF155, E4F1, EP300, MNT, SOX5, DPF2, TRIM24, SOX6, DDX20, E2F1, ZNF175, PDX1, CHD8, POU5F1, ZNF263, ID3, MTA2, ZBTB48, NBN, ARID3A, TBP, ERG, SMARCC2, MYC, SMARCA4, ARID1B, RAD21, NKX2-1, FOXK2, ZNF8, STAT3, SOX10, NFE2, RCOR1, ZNF639, NFRKB, ARNTL, NR2F6, NR3C1, CEBPB, KMT2A, NFE2L1, SPI1, IRF1, HDAC2, GATA2, GATAD2B, SIX2, TAF9B, EP400, ZIM3, NCOA2, ATF1, RUNX1, MAFG, SMC1A, CEBPA, HDAC1, SOX13, ZFX, ZBTB2, ZNF384, NOTCH1, ZNF133, BRD9, RUNX2, GATA4, ZNF184, PBX4, BACH1, SOX11, NRF1, ARNT, PRDM9, ZEB2, PBX3, FOXM1, SUPT5H, CDK8, FOS, GMEB1, SCRT2, PIAS1, C11orf30, L3MBTL2, RBM22, MAFK, BCL11A, NR4A1, REST, ZNF479, ZBTB7A, PHIP, FOXA2, CREM, NFATC1, E2F8, ZNF600, WT1, MAFF, MEF2C, ZBTB33, ZNF318, RELA, NEUROD1, JUNB, CHAMP1, HIF1A, OTX2, GATA3, TAL1, MAX, ZNF449, GATA1, ZNF143, KLF4, ZNF592, CEBPG, NR2F1, PKNOX1, NFKB1, PHOX2B, AR, ZBTB40, MYNN, RNF2, NCOR1, BRD4, JUND, ILF3, CLOCK, NOTCH3, SCRT1, MEF2D, ZNF24, ADNP, ZNF316
- Target gene symbol (double-evidenced CRMs): BACH1,MAP3K7CL,CCT8,USP16
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops