- Basic information
- CohesinDB ID: CDBP00416189
- Locus: chr21-29318199-29318712
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Data sourse: GSE116344, ENCSR153HNT
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Cell type: K-562, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 56%,
"7_Enh": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZNF263, NFATC1, ZFX, ZNF692, ZBTB48, FOXA1, LEO1, RELA, ASCL1, NEUROD1, RUNX2, NFIC, MYC, PRDM1, TCF4, HIF1A, GRHL3, OTX2, BHLHE22, MAX, CBFA2T3, ZNF143, GATA1, SUPT5H, ZFP69B, CEBPB, NCOA3, TRIM28, NEUROG2, SUPT16H, EZH2, LMO2, OCA2, GRHL2, MYOD1, CTCF, RBM22, AR, GATA6, FLI1, BRD4, CLOCK, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): CCT8,BACH1,MAP3K7CL,USP16
- Function elements
- Human SNPs: Body_mass_index
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops