- Basic information
- CohesinDB ID: CDBP00416190
- Locus: chr21-29319627-29319847
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 69%,
"7_Enh": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZNF263, NFATC1, ZFX, ZNF692, ZBTB48, FOXA1, LEO1, RELA, ASCL1, NEUROD1, RUNX2, NFIC, MYC, PRDM1, TCF4, HIF1A, GRHL3, OTX2, BHLHE22, MAX, CBFA2T3, ZNF143, GATA1, SUPT5H, ZFP69B, CEBPB, NCOA3, TRIM28, NEUROG2, SUPT16H, EZH2, LMO2, OCA2, GRHL2, MYOD1, CTCF, RBM22, AR, GATA6, FLI1, BRD4, CLOCK, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,BACH1,USP16
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops