Deatailed information for cohesin site CDBP00416197
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00416197
- Locus: chr21-29324965-29325251
- Data sourse: GSE206145, GSE206145-NatGen2015, GSE111913, GSE67783
- Cell type: RPE, Fibroblast, HSPC, RT-112
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2,SMC1
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 81%,
"4_Tx": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZBTB48, ZBTB33
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,USP16,BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000156256, ENSG00000156261, ENSG00000156265, ENSG00000156273,
- Related loop: chr21:29050000-29075000~~chr21:29300000-29325000, chr21:29075000-29100000~~chr21:29325000-29350000, chr21:29150000-29175000~~chr21:29325000-29350000, chr21:29175000-29200000~~chr21:29300000-29325000, chr21:29225000-29250000~~chr21:29325000-29350000, chr21:29300000-29325000~~chr21:33200000-33225000,
Tools:
- Assay
