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Basic information

CohesinDB ID: CDBP00415270

Locus: chr21-25624549-25624749

Data sourse: ENCSR000BLD, GSE105028

Cell type: H1-hESC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 61% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 90%, "14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX3-FOXO1, NFIA, NR3C1, CHD8, NFIC, SMARCA4, SOX2, RAD21, HSF1, DUX4, CTCF, BCL11A

Target gene symbol (double-evidenced CRMs): CYYR1,ATP5PF,ADAMTS1,JAM2,GABPA,APP

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000154721, ENSG00000154723, ENSG00000154727, ENSG00000142192, ENSG00000166265, ENSG00000154734,

eachgene

Deatailed information for cohesin site CDBP00415270