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Basic information

CohesinDB ID: CDBP00415508

Locus: chr21-26529571-26529884

Data sourse: ENCSR000EHX

Cell type: SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 42% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 82%, "5_TxWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, MYCN, CHD2, FOXA1, BAHD1, KDM1A, JUNB, ISL1, RAD21, PBX4, GATA3, PRDM9, NKX3-1, FOS, RCOR1, HAND2, CEBPB, ESR1, PITX3, EBF3, PHOX2B, JUN, EP300, GATA2, BRD4, TEAD4, TBX2, PDX1

Target gene symbol (double-evidenced CRMs): APP,GABPA,JAM2,CYYR1,MRPL39

Function elements

Human SNPs: .

Number of somatic mutations (coding): 8

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154719, ENSG00000154721, ENSG00000154727, ENSG00000142192, ENSG00000166265,

Tools:

Assay

refGene

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Cohesin site CDBP00415508

CDBP00415508 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00415508

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