- Basic information
- CohesinDB ID: CDBP00415510
- Locus: chr21-26543512-26543793
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 76%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CDK6, TOP2A, POU2F2
- Target gene symbol (double-evidenced CRMs): JAM2,APP,GABPA,MRPL39,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154721,
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25525000-25550000~~chr21:26525000-26550000,
chr21:25600000-25625000~~chr21:26525000-26550000,
chr21:25650000-25675000~~chr21:26525000-26550000,
chr21:25750000-25775000~~chr21:26525000-26550000,
chr21:25775000-25800000~~chr21:26525000-26550000,
chr21:25875000-25900000~~chr21:26525000-26550000,
chr21:25950000-25975000~~chr21:26525000-26550000,
chr21:26050000-26075000~~chr21:26525000-26550000,
chr21:26150000-26175000~~chr21:26525000-26550000,
chr21:26250000-26275000~~chr21:26525000-26550000,
chr21:26375000-26400000~~chr21:26525000-26550000,
chr21:26425000-26450000~~chr21:26525000-26550000,
chr21:26525000-26550000~~chr21:26625000-26650000,
chr21:26525000-26550000~~chr21:26650000-26675000,
chr21:26525000-26550000~~chr21:26675000-26700000,
chr21:26525000-26550000~~chr21:28425000-28450000,