- Basic information
- CohesinDB ID: CDBP00415541
- Locus: chr21-26714761-26718662
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 71% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.178
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 63%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: JUND, ATF2, ATF7
- Target gene symbol (double-evidenced CRMs): ADAMTS1,APP,ATP5PF,MRPL39,CYYR1,GABPA
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 27
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154723,
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
ENSG00000154734,
- Related loop:
chr21:25600000-25625000~~chr21:26700000-26725000,
chr21:25734147-25737065~~chr21:26715239-26718238,
chr21:25775000-25800000~~chr21:26700000-26725000,
chr21:25789414-25791324~~chr21:26715348-26718310,
chr21:25789469-25791355~~chr21:26715196-26718405,
chr21:25789485-25791180~~chr21:26715356-26718205,
chr21:25789502-25791503~~chr21:26715239-26718238,
chr21:25789503-25791490~~chr21:26715252-26718261,
chr21:25789504-25791193~~chr21:26715280-26718256,
chr21:25789567-25791545~~chr21:26715396-26718303,
chr21:25825000-25850000~~chr21:26700000-26725000,
chr21:25850000-25875000~~chr21:26700000-26725000,
chr21:25862108-25863550~~chr21:26715501-26718096,
chr21:25871157-25873150~~chr21:26715252-26718261,
chr21:25875000-25900000~~chr21:26700000-26725000,
chr21:25880592-25882759~~chr21:26715468-26718051,
chr21:25880643-25882866~~chr21:26715421-26718120,
chr21:25880719-25882754~~chr21:26716644-26718024,
chr21:25880755-25882952~~chr21:26715348-26718310,
chr21:25880758-25882873~~chr21:26715355-26718381,
chr21:25880762-25882939~~chr21:26715356-26718205,
chr21:25880770-25883137~~chr21:26715200-26718356,
chr21:25880785-25882961~~chr21:26715447-26718081,
chr21:25880794-25882895~~chr21:26715448-26718086,
chr21:25880795-25883103~~chr21:26714832-26718268,
chr21:25880802-25883195~~chr21:26715193-26718542,
chr21:25880806-25883113~~chr21:26715204-26718284,
chr21:25880813-25882766~~chr21:26715409-26718024,
chr21:25880821-25883172~~chr21:26715280-26718256,
chr21:25880823-25883149~~chr21:26715242-26718467,
chr21:25880831-25882882~~chr21:26715317-26718206,
chr21:25880833-25882973~~chr21:26715347-26718278,
chr21:25880871-25883139~~chr21:26715160-26718522,
chr21:25880873-25883193~~chr21:26715252-26718261,
chr21:25880878-25883186~~chr21:26715477-26718366,
chr21:25880879-25883157~~chr21:26715196-26718405,
chr21:25880911-25882804~~chr21:26715538-26718232,
chr21:25880921-25883079~~chr21:26715396-26718303,
chr21:25880943-25882795~~chr21:26715485-26718222,
chr21:25881104-25882779~~chr21:26715351-26718059,
chr21:25881130-25882858~~chr21:26715239-26718238,
chr21:25886700-25888011~~chr21:26715421-26718120,
chr21:25886797-25887944~~chr21:26715196-26718405,
chr21:25894856-25897119~~chr21:26715348-26718310,
chr21:25894872-25896862~~chr21:26715196-26718405,
chr21:25895048-25897116~~chr21:26715193-26718542,
chr21:25895093-25897256~~chr21:26715477-26718366,
chr21:25895098-25896866~~chr21:26715200-26718356,
chr21:25895145-25896737~~chr21:26715421-26718120,
chr21:25895157-25897132~~chr21:26715317-26718206,
chr21:25895184-25896849~~chr21:26715447-26718081,
chr21:26000000-26025000~~chr21:26700000-26725000,
chr21:26010694-26012200~~chr21:26715347-26718278,
chr21:26010769-26012247~~chr21:26715196-26718405,
chr21:26075000-26100000~~chr21:26700000-26725000,
chr21:26150000-26175000~~chr21:26700000-26725000,
chr21:26168536-26171703~~chr21:26715160-26718522,
chr21:26168542-26171691~~chr21:26714717-26718289,
chr21:26168542-26171800~~chr21:26715396-26718303,
chr21:26168566-26171735~~chr21:26715280-26718256,
chr21:26168567-26172542~~chr21:26715356-26718205,
chr21:26168579-26171721~~chr21:26714841-26717171,
chr21:26168586-26171752~~chr21:26715190-26718539,
chr21:26168591-26172572~~chr21:26715252-26718261,
chr21:26175000-26200000~~chr21:26700000-26725000,
chr21:26177658-26178878~~chr21:26715348-26718310,
chr21:26275000-26300000~~chr21:26700000-26725000,
chr21:26325000-26350000~~chr21:26700000-26725000,
chr21:26375000-26400000~~chr21:26700000-26725000,
chr21:26400000-26425000~~chr21:26700000-26725000,
chr21:26475000-26500000~~chr21:26700000-26725000,
chr21:26500000-26525000~~chr21:26700000-26725000,
chr21:26550000-26575000~~chr21:26700000-26725000,
chr21:26575000-26600000~~chr21:26700000-26725000,
chr21:26700000-26725000~~chr21:26825000-26850000,
chr21:26700000-26725000~~chr21:28725000-28750000,
chr21:26714841-26717171~~chr21:27422531-27425391,
chr21:26715447-26718081~~chr21:27700496-27701861,