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Basic information

CohesinDB ID: CDBP00415573

Locus: chr21-26826754-26827193

Data sourse: GSE206145, GSE116344, GSE111913

Cell type: RPE, RT-112, RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Mau2,SA1,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 41% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 79%, "7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF394, GLIS1, CHD8, FOXA2, ZFX, ZNF534, XBP1, FOXA1, ERG, RELA, JUNB, RUNX2, ARNT, CBFB, STAT3, TP63, FOS, ESR1, TP53, TP73, SETDB1, ZSCAN22, JUN, SPI1, AR, ZNF366, NOTCH3, TFAP2C

Target gene symbol (double-evidenced CRMs): GABPA,JAM2,LINC00113,ADAMTS5,MRPL39,ATP5PF,APP

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 9

Related genes and loops

Related gene: ENSG00000154719, ENSG00000154721, ENSG00000154723, ENSG00000154727, ENSG00000142192, ENSG00000154736, ENSG00000225298,

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Deatailed information for cohesin site CDBP00415573