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Basic information

CohesinDB ID: CDBP00415429

Locus: chr21-26162072-26162427

Data sourse: ENCSR230ZWH, ENCSR917QNE

Cell type: Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 57%, "15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, CHD8, FOXA2, FOXA1, SAP130, ZNF18, PRDM10, YY1, MYC, ZNF362, HOMEZ, PRDM1, GRHL3, RXRA, GATA3, PBX3, KMT2A, ZNF334, TCF12, SP1, HNF4A, AR, PAX8, ZBTB7A, ZGPAT, PHIP, ZNF766, PRDM6

Target gene symbol (double-evidenced CRMs): JAM2,ADAMTS1,CYYR1,MRPL39,GABPA,APP

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154719, ENSG00000154721, ENSG00000154727, ENSG00000142192, ENSG00000166265, ENSG00000154734,

eachgene

Deatailed information for cohesin site CDBP00415429