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Basic information

CohesinDB ID: CDBG00015928

Gene Symbol: RBM11

Ensembl ID: ENSG00000185272

Gene locus: chr21:14216129-14228372 Strand: +

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): True

All evidenced type: Interaction,DEGs

Regulatory cohesin (double-evidenced): chr21-13806228-13807204, chr21-13809209-13809482, chr21-13810125-13810345, chr21-13816164-13816623, chr21-14026851-14028433, chr21-14030739-14031244, chr21-14031633-14031954, chr21-14047133-14047213, chr21-14130738-14131176, chr21-14215832-14216924, chr21-14362036-14362277, chr21-14362949-14363444, chr21-14366465-14366972, chr21-14376765-14377390, chr21-14378678-14379134, chr21-14382340-14384384, chr21-14389947-14390070, chr21-14524873-14526196, chr21-14526494-14529969, chr21-14530357-14536642, chr21-14537276-14539605, chr21-14541246-14550672, chr21-14731536-14731839, chr21-14733310-14733532, chr21-14733859-14734983, chr21-14735214-14740505, chr21-14741240-14741827, chr21-14742627-14743253, chr21-14743590-14745739, chr21-14751049-14751687, chr21-14752293-14755665, chr21-14757628-14757997, chr21-14762012-14763864, chr21-14764487-14764787, chr21-14765555-14765610, chr21-14766150-14766779, chr21-14768089-14768942, chr21-14771132-14775232, chr21-14776599-14776961, chr21-14777435-14777640, chr21-14779142-14779611, chr21-14789081-14789506, chr21-14949802-14950014, chr21-14952341-14953601, chr21-14953826-14954137, chr21-14955906-14957615, chr21-14957952-14958563, chr21-14959237-14960295, chr21-14968863-14969588, chr21-15149683-15150166, chr21-15151490-15152324, chr21-15155413-15155883, chr21-15159358-15159865, chr21-15163125-15163429, chr21-15164026-15164374, chr21-15164670-15165346, chr21-15171644-15171827, chr21-15172374-15174253, chr21-15455633-15456680, chr21-15468364-15468759, chr21-15470766-15470841, chr21-15471943-15472539, chr21-15480544-15485701, chr21-15486435-15487318, chr21-15495910-15496512,

Co-expression with cohesin genes Rho = 0.3243 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.527
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.888
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,Liver,RT-112,K-562,H1-hESC,HFF-hTERT,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm

Cohesin-loop type: HiC,Direct

Cohesin-loop study: GSE44267, 4DNFI8649RQJ, GSE52457, 4DNFIPAF4PYT, Direct, 4DNFIFI6NIKJ, 4DNFIE8E4ANZ, GSE105028, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFIDBIEXI7, ENCSR545YBD, GSE155380, GSE58752

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: True

Involved cell types for DEG evidence: CMK,SLK

Cohesin-DEGs, number of studies: 3

Cohesin-DEGs, study: GSE154086,GSE138937

Cohesin-DEGs, subunit: CTCF,Rad21,SA2

Tools:

Assay

refGene

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Ruler

RBM11 gene locus

RBM11 related cohesin sites

RBM11 related cohesin loop

Deatailed information for gene ENSG00000185272

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